Basic Information
Locus ID:
AsparagusV1_04.1310.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Seven transmembrane domain-containing tyrosine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 36682634 | 36698312 | - | AsparagusV1_04.1310.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.18 | 47,159.38 Da | 37.68 | 84.39 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 142 | 391 | 9.91761E-93 | - |
| Pfam | PF00069 | Protein kinase domain | 140 | 391 | 4.3E-54 | IPR000719 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 30 | 116 | 1.3E-10 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 21 | 117 | 1.17E-20 | IPR036770 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 141 | 394 | 3.89E-72 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 130 | 215 | 4.1E-22 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 7 | 129 | 1.3E-21 | IPR036770 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 216 | 413 | 6.4E-51 | - |
| SMART | SM00248 | ANK_2a | 89 | 119 | 500.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 23 | 52 | 1700.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 56 | 85 | 1.5E-4 | IPR002110 |
| PIRSF | PIRSF000654 | ILK | 6 | 412 | 1.6E-122 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 136 | 401 | 42.534164 | IPR000719 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 56 | 88 | 13.06336 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 56 | 88 | 11.691612 | - |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 142 | 163 | - | IPR017441 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 365 | 387 | 9.3E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 250 | 268 | 9.3E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 320 | 342 | 9.3E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 211 | 224 | 9.3E-12 | IPR001245 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G18950.2 | - | 0 |
| RefSeq | XP_020260919.1 | serine/threonine-protein kinase STY8-like isoform X1 [Asparagus officinalis] | 0 |
| Q93Z30 | Serine/threonine-protein kinase 12 OS=Arabidopsis thaliana OX=3702 GN=BHP PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1F366 | Protein kinase domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C04F13100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29348 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30010930 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1310.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G14906 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6135, nbisL1-mrna-9505 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016722 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.488 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21756 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-7321, nbisL1-mrna-7322, nbisL1-mrna-7323 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.269 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017523 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19640 |
| Salicaceae | Populus euphratica | 1 | populus_peu31675 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610332 |
| Solanaceae | Solanum chilense | 1 | SOLCI005577300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107032428 |