Basic Information
Locus ID:
AsparagusV1_04.1293.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
eukaryotic translation initiation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 36029683 | 36037394 | - | AsparagusV1_04.1293.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.85 | 30,821.55 Da | 39.10 | 74.23 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00125 | Core histone H2A/H2B/H3/H4 | 151 | 227 | 2.1E-18 | IPR007125 |
| Pfam | PF01287 | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 85 | 140 | 1.1E-18 | IPR020189 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 86 | 140 | 3.66E-16 | IPR012340 |
| SUPERFAMILY | SSF50104 | Translation proteins SH3-like domain | 15 | 93 | 3.01E-24 | IPR008991 |
| SUPERFAMILY | SSF47113 | Histone-fold | 147 | 230 | 3.71E-36 | IPR009072 |
| Gene3D | G3DSA:2.30.30.30 | - | 1 | 85 | 1.1E-37 | IPR014722 |
| Gene3D | G3DSA:1.10.20.10 | Histone, subunit A | 141 | 235 | 3.1E-42 | IPR009072 |
| Gene3D | G3DSA:2.40.50.140 | - | 86 | 140 | 6.3E-22 | - |
| SMART | SM00427 | h2b3 | 154 | 239 | 5.4E-43 | IPR000558 |
| SMART | SM01376 | eIF_5a_2 | 85 | 162 | 2.7E-16 | IPR020189 |
| TIGRFAM | TIGR00037 | eIF_5A: translation elongation factor IF5A | 17 | 123 | 6.4E-34 | IPR001884 |
| PRINTS | PR00621 | Histone H2B signature | 164 | 182 | 5.2E-32 | IPR000558 |
| PRINTS | PR00621 | Histone H2B signature | 205 | 222 | 5.2E-32 | IPR000558 |
| PRINTS | PR00621 | Histone H2B signature | 222 | 235 | 5.2E-32 | IPR000558 |
| PRINTS | PR00621 | Histone H2B signature | 183 | 203 | 5.2E-32 | IPR000558 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 253 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13950.1 | eukaryotic elongation factor 5A-1. Encodes eukaryotic translation initiation factor 5A (EIF-5A).In mammalian cells it functions as a shuttle protein that translocates mRNA from the nucleus to cytoplasmic ribosomes. Overexpression results in an increase in both primary and secondary xylem formation. In RNAi suppressed lines, xylem formation is reduced. | 0 |
| RefSeq | XP_020259462.1 | eukaryotic translation initiation factor 5A-2-like [Asparagus officinalis] | 0 |
| P24922 | Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia OX=4092 GN=EIF-5A2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1F5T4 | eIF-5a domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C04F12930 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology