Basic Information
Locus ID:
AsparagusV1_04.1194.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 32135365 | 32135880 | + | AsparagusV1_04.1194.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.42 | 18,793.61 Da | 35.93 | 82.28 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 100 | 162 | 3.64746E-19 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 98 | 161 | 3.3E-15 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 24 | 85 | 2.8E-16 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 13 | 163 | 2.98E-45 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 6 | 89 | 3.8E-23 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 90 | 167 | 5.6E-24 | - |
| SMART | SM00054 | efh_1 | 24 | 52 | 6.4E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 136 | 164 | 3.1E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 100 | 128 | 4.3E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 60 | 88 | 0.019 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 56 | 91 | 11.082272 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 20 | 55 | 15.043417 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 132 | 167 | 13.369694 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 96 | 131 | 15.489744 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 33 | 45 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 69 | 81 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 109 | 121 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 145 | 157 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32250.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_020260808.1 | probable calcium-binding protein CML11 [Asparagus officinalis] | 0 |
| Q9AWK2 | Probable calcium-binding protein CML11 OS=Oryza sativa subsp. japonica OX=39947 GN=CML11 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1F060 | Calcium-binding protein CML11 OS=Asparagus officinalis OX=4686 GN=A4U43_C04F11940 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology