Basic Information
Locus ID:
AsparagusV1_04.1063.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Variant SH3 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 27095091 | 27103797 | + | AsparagusV1_04.1063.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 43,136.30 Da | 44.67 | 80.08 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14604 | Variant SH3 domain | 290 | 338 | 1.6E-12 | IPR001452 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 30 | 242 | 1.72E-24 | IPR027267 |
| SUPERFAMILY | SSF50044 | SH3-domain | 287 | 345 | 3.28E-16 | IPR036028 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 272 | 352 | 5.6E-17 | - |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 29 | 268 | 4.3E-12 | IPR027267 |
| SMART | SM00326 | SH3_2 | 286 | 341 | 3.4E-14 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 283 | 342 | 20.564796 | IPR001452 |
| PRINTS | PR00499 | Neutrophil cytosol factor 2 signature | 324 | 337 | 8.2E-6 | - |
| PRINTS | PR00499 | Neutrophil cytosol factor 2 signature | 308 | 324 | 8.2E-6 | - |
| PRINTS | PR00499 | Neutrophil cytosol factor 2 signature | 288 | 308 | 8.2E-6 | - |
| Coils | Coil | Coil | 177 | 197 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34660.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_020260707.1 | SH3 domain-containing protein 2-like [Asparagus officinalis] | 0 |
| Q8VWF1 | SH3 domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=SH3P2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1EZW1 | SH3 domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C04F10630 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology