Basic Information
Locus ID:
AsparagusV1_04.1057.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 27004882 | 27029785 | + | AsparagusV1_04.1057.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 84,033.32 Da | 41.62 | 86.09 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 289 | 425 | 1.44009E-69 | - |
| Pfam | PF00570 | HRDC domain | 619 | 680 | 7.2E-7 | IPR002121 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 321 | 415 | 9.1E-15 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 122 | 267 | 5.7E-11 | IPR011545 |
| Pfam | PF09382 | RQC domain | 490 | 594 | 5.1E-6 | IPR018982 |
| Pfam | PF16124 | RecQ zinc-binding | 428 | 484 | 3.2E-11 | IPR032284 |
| SUPERFAMILY | SSF47819 | HRDC-like | 619 | 686 | 6.21E-5 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 137 | 432 | 4.55E-56 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 289 | 486 | 8.2E-64 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 488 | 595 | 6.6E-27 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 44 | 288 | 3.6E-76 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 615 | 686 | 5.5E-11 | IPR044876 |
| SMART | SM00487 | ultradead3 | 84 | 297 | 2.2E-14 | IPR014001 |
| SMART | SM00490 | helicmild6 | 335 | 416 | 1.4E-25 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 121 | 527 | 1.6E-148 | IPR004589 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 611 | 690 | 12.750874 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 306 | 455 | 19.193005 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 122 | 281 | 19.412041 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 687 | 736 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 698 | 730 | - | - |
| Coils | Coil | Coil | 714 | 734 | - | - |
| Coils | Coil | Coil | 607 | 627 | - | - |
| Coils | Coil | Coil | 11 | 38 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_020260705.1 | LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 34 [Asparagus officinalis] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1F4P4 | ATP-dependent DNA helicase OS=Asparagus officinalis OX=4686 GN=A4U43_C04F10570 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology