Basic Information
Locus ID:
AsparagusV1_04.1026.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Anaphase-promoting complex subunit cdc20
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 25950695 | 25953327 | + | AsparagusV1_04.1026.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.91 | 52,752.43 Da | 47.81 | 74.38 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 181 | 454 | 7.55856E-43 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 280 | 315 | 6.4E-7 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 200 | 257 | 4.0E-7 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 329 | 369 | 0.0025 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 419 | 454 | 8.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 174 | 454 | 1.1E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 103 | 457 | 5.1E-124 | IPR015943 |
| SMART | SM00320 | WD40_4 | 276 | 315 | 3.7E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 192 | 231 | 2.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 327 | 369 | 2.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 372 | 412 | 160.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 415 | 454 | 6.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 234 | 272 | 1.4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 199 | 231 | 8.887423 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 283 | 317 | 11.708317 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 422 | 455 | 10.416506 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 199 | 240 | 11.878597 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 422 | 455 | 12.513543 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 283 | 324 | 14.217871 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 302 | 316 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 441 | 455 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 143 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_020260680.1 | cell division cycle 20.2, cofactor of APC complex-like [Asparagus officinalis] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1F557 | ANAPC4_WD40 domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C04F10260 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology