Basic Information
Locus ID:
AsparagusV1_04.1015.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Belongs to the universal ribosomal protein uS3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 25755986 | 25760033 | + | AsparagusV1_04.1015.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.51 | 26,475.54 Da | 38.14 | 92.49 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02413 | 40S_S3_KH | 17 | 97 | 2.30479E-50 | - |
| Pfam | PF07650 | KH domain | 22 | 95 | 2.0E-11 | IPR004044 |
| Pfam | PF00189 | Ribosomal protein S3, C-terminal domain | 108 | 190 | 7.9E-25 | IPR001351 |
| SUPERFAMILY | SSF54814 | Prokaryotic type KH domain (KH-domain type II) | 12 | 101 | 2.22E-25 | IPR009019 |
| SUPERFAMILY | SSF54821 | Ribosomal protein S3 C-terminal domain | 95 | 192 | 8.63E-28 | IPR036419 |
| Gene3D | G3DSA:3.30.300.20 | - | 3 | 94 | 7.0E-47 | IPR015946 |
| Gene3D | G3DSA:3.30.1140.32 | - | 95 | 221 | 6.0E-66 | IPR036419 |
| TIGRFAM | TIGR01008 | uS3_euk_arch: ribosomal protein uS3 | 10 | 212 | 2.4E-71 | IPR005703 |
| ProSiteProfiles | PS50823 | Type-2 KH domain profile. | 23 | 94 | 11.069285 | IPR004044 |
| ProSitePatterns | PS00548 | Ribosomal protein S3 signature. | 149 | 185 | - | IPR018280 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35530.1 | Ribosomal protein S3 family protein. | 0 |
| RefSeq | XP_020260672.1 | 40S ribosomal protein S3-3-like [Asparagus officinalis] | 0 |
| Q9FJA6 | Small ribosomal subunit protein uS3x OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1F473 | KH type-2 domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C04F10150 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology