Basic Information
Locus ID:
AsparagusV1_03.994.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
eukaryotic translation initiation factor-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 22054275 | 22054706 | - | AsparagusV1_03.994.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 16,651.96 Da | 42.27 | 90.63 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 50 | 117 | 7.45494E-11 | - |
| Pfam | PF00240 | Ubiquitin family | 50 | 118 | 4.3E-7 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 43 | 123 | 7.83E-15 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 43 | 123 | 1.1E-11 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 46 | 123 | 15.144 | IPR000626 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_018684519.1 | PREDICTED: uncharacterized protein LOC103991175 [Musa acuminata subsp. malaccensis] | 0 |
| TrEMBL | A0A5P1FBI8 | Ubiquitin-like domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C03F9940 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg10615 |
| Apiaceae | Apium graveolens | 1 | Ag11G03313 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.994.V1.1 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G32360.1 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g14730.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g012060.2N, BniB08g020360.2N |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026741 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1355 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-20438, nbisL1-mrna-20462 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8800 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21332 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000003l.321 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17198 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4733 |
| Salicaceae | Populus euphratica | 2 | populus_peu22662, populus_peu24076 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132602560 |
| Solanaceae | Solanum chilense | 2 | SOLCI003907900, SOLCI007324400 |