Basic Information
Locus ID:
AsparagusV1_03.868.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
lysine-specific demethylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 19059512 | 19066534 | - | AsparagusV1_03.868.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.37 | 43,166.93 Da | 71.41 | 72.94 | -0.83 |
Protein Domain:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11950.2 | - | 0 |
| RefSeq | XP_020258330.1 | lysine-specific demethylase JMJ25-like [Asparagus officinalis] | 0 |
| C0SUU8 | Lysine-specific demethylase JMJ26 OS=Arabidopsis thaliana OX=3702 GN=JMJ26 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1F8E0 | Lysine-specific demethylase JMJ25-like OS=Asparagus officinalis OX=4686 GN=A4U43_C03F8680 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 2 | COCNU_06G010020, COCNU_14G006700 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103714750, gene-LOC103724011 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.868.V1.1 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno13g00140 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g28940 |
| Poaceae | Echinochloa crus-galli | 6 | AH03.3344, AH03.3939, BH03.3531, BH03.4231, CH03.3740 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0572320, gene-QOZ80_7BG0603800 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0135860.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_040264 |
| Poaceae | Oryza coarctata | 2 | Oco13G009860, Oco14G010510 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g37140.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G312900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0304293, Pt_Chr0304340 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G004580, Chr24G009860, Chr27G012740, Chr28G009210 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G388900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG026830, gene_TRIDC2BG031270 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G207000.1, TraesCS2B02G234100.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb106740_P001, Zm00001eb323940_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-10645, nbis-gene-56244, nbis-gene-726 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5336, Zma_g6641 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g00430 |
| Salicaceae | Populus euphratica | 1 | populus_peu18286 |
| Zosteraceae | Zostera marina | 1 | Zosma05g20610.v3.1 |