Basic Information
Locus ID:
AsparagusV1_03.845.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Transport inhibitor response 1-like protein Os04g0395600
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 18592745 | 18594798 | + | AsparagusV1_03.845.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.09 | 38,183.44 Da | 54.68 | 95.49 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 23 | 61 | 8.4E-20 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 80 | 126 | 1.2E-23 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 100 | 335 | 1.67E-26 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 11 | 55 | 1.16E-7 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 19 | 59 | 6.5E-17 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 60 | 336 | 1.5E-84 | IPR032675 |
| SMART | SM00256 | fbox_2 | 23 | 64 | 1.3E-4 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_020256430.1 | protein AUXIN SIGNALING F-BOX 3-like [Asparagus officinalis] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5P1F8B9 | F-box domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C03F8450 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology