Basic Information
Locus ID:
AsparagusV1_03.841.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 18531662 | 18533399 | + | AsparagusV1_03.841.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 59,026.19 Da | 47.77 | 94.84 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 29 | 65 | 9.4E-7 | IPR001810 |
| Pfam | PF08387 | FBD | 442 | 483 | 8.1E-7 | IPR006566 |
| SUPERFAMILY | SSF81383 | F-box domain | 25 | 77 | 2.49E-9 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 205 | 486 | 1.26E-8 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 194 | 510 | 1.3E-7 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 17 | 67 | 5.4E-7 | - |
| SMART | SM00256 | fbox_2 | 32 | 72 | 1.7E-4 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 202 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 177 | 197 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03220.1 | Protein with RNI-like/FBD-like domains. | 0 |
| RefSeq | XP_020256425.1 | putative F-box/FBD/LRR-repeat protein At4g03220 [Asparagus officinalis] | 0 |
| Q9ZR09 | Putative F-box/FBD/LRR-repeat protein At4g03220 OS=Arabidopsis thaliana OX=3702 GN=At4g03220 PE=4 SV=1 | 0 | |
| TrEMBL | A0A5P1F940 | F-box domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C03F8410 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology