Basic Information
Locus ID:
AsparagusV1_03.827.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
DYW family of nucleic acid deaminases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 18372170 | 18373015 | + | AsparagusV1_03.827.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.47 | 32,087.49 Da | 57.19 | 79.54 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 158 | 271 | 1.5E-38 | IPR032867 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 49 | 170 | 1.5E-12 | IPR011990 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G47580.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_020256422.1 | pentatricopeptide repeat-containing protein At2g22070-like [Asparagus officinalis] | 0 |
| P0C7R1 | Pentatricopeptide repeat-containing protein DWY1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DYW1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1FDD4 | DYW_deaminase domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C03F8270 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg13119, jg32704 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg20102, Sbi_jg24762, Sbi_jg30858, Sbi_jg44747 ... |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000001426, gene:ENSEOMG00000001999 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30018980, pistato.v30187750 |
| Apiaceae | Apium graveolens | 1 | Ag4G01043 |
| Arecaceae | Cocos nucifera | 2 | COCNU_14G009990, scaffold000429G000160 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103721177, gene-LOC120105606, gene-LOC120109483 |
| Asparagaceae | Asparagus officinalis | 8 | AsparagusV1_01.538.V1.1, AsparagusV1_03.1919.V1.1 ... |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G47580.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011729m.g.v1.0, Thhalv10012004m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g34620.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB04g030440.2N, BniB07g008840.2N, BniB07g008950.2N ... |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1234 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g07210 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1341 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00029399, Pov_00031471 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb8G35834 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.27, BH01.605, CH01.587 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0214540, gene-QOZ80_3BG0259760 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.5HG0429830.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_061613 |
| Poaceae | Oryza coarctata | 3 | Oco01G010650, Oco05G024590, Oco06G025530 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g55840.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G068200, gene-BS78_06G128500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0305355, Pt_Ctg00194 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G004210, Chr01G024700, Chr04G029450, Chr12G036490 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G638000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG058640, gene_TRIDC5BG062800 |
| Poaceae | Triticum aestivum | 3 | TraesCS2D02G002900.1.cds1, TraesCS5A02G403500.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb213980_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-16304, nbis-gene-22668, nbis-gene-5666 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g2697 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g06660 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-12099 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000008l.259 |
| Salicaceae | Populus euphratica | 3 | populus_peu10497, populus_peu26565, populus_peu31937 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G1380, TC01G1879 |
| Zosteraceae | Zostera marina | 1 | Zosma01g01320.v3.1 |