Basic Information
Locus ID:
AsparagusV1_03.806.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 18102794 | 18119129 | - | AsparagusV1_03.806.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 85,708.24 Da | 50.30 | 78.24 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 392 | 444 | 3.76057E-29 | - |
| Pfam | PF00412 | LIM domain | 392 | 447 | 3.5E-10 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 541 | 749 | 1.7E-101 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 418 | 473 | 2.37E-9 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 384 | 417 | 3.87E-7 | - |
| SUPERFAMILY | SSF56219 | DNase I-like | 56 | 311 | 6.67E-45 | IPR036691 |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 387 | 466 | 6.3E-16 | - |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 36 | 341 | 1.8E-70 | IPR036691 |
| SMART | SM00726 | uim | 316 | 335 | 0.85 | IPR003903 |
| SMART | SM00132 | lim_4 | 391 | 443 | 6.0E-15 | IPR001781 |
| SMART | SM00726 | uim | 347 | 366 | 0.2 | IPR003903 |
| SMART | SM00128 | i5p_5 | 18 | 313 | 8.0E-38 | IPR000300 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 316 | 335 | 8.942998 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 390 | 450 | 12.6523 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 392 | 426 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 680 | 696 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 680 | 700 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_020256396.1 | LOW QUALITY PROTEIN: protein DA1-related 1-like [Asparagus officinalis] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A5P1FDI1 | LIM zinc-binding domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C03F8060 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology