Basic Information
Locus ID:
AsparagusV1_03.803.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 18034749 | 18035450 | + | AsparagusV1_03.803.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.48 | 25,415.32 Da | 43.06 | 65.84 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 35 | 79 | 2.54527E-30 | - |
| Pfam | PF13445 | RING-type zinc-finger | 37 | 75 | 3.0E-8 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 34 | 90 | 1.23E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 92 | 1.1E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 37 | 77 | 3.6E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 37 | 78 | 13.300693 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 52 | 61 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 94 | 122 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_020256394.1 | RING finger protein 5 [Asparagus officinalis] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1F887 | RING-type E3 ubiquitin transferase OS=Asparagus officinalis OX=4686 GN=A4U43_C03F8030 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology