Basic Information
Locus ID:
AsparagusV1_03.613.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 13318823 | 13325507 | - | AsparagusV1_03.613.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 67,363.55 Da | 41.86 | 82.47 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 303 | 337 | 0.0022 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 302 | 588 | 1.45E-37 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 295 | 588 | 4.2E-40 | IPR015943 |
| SMART | SM00320 | WD40_4 | 299 | 338 | 1.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 505 | 548 | 310.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 386 | 424 | 12.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 344 | 383 | 0.0066 | IPR001680 |
| SMART | SM00667 | Lish | 114 | 146 | 6.8E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 551 | 587 | 0.42 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 306 | 347 | 12.881143 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 351 | 392 | 11.778342 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 154 | 204 | 8.272852 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 306 | 339 | 10.337415 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 114 | 146 | 9.588135 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 351 | 388 | 9.124694 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 325 | 339 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 574 | 588 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_020256207.1 | WD repeat-containing protein 26-like [Asparagus officinalis] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1FD05 | WD_REPEATS_REGION domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C03F6130 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology