Basic Information
Locus ID:
AsparagusV1_03.473.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 10421485 | 10458281 | + | AsparagusV1_03.473.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.06 | 126,719.14 Da | 49.88 | 96.06 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05233 | SDR_c | 75 | 293 | 1.17966E-54 | - |
| Pfam | PF00069 | Protein kinase domain | 846 | 1115 | 4.8E-24 | IPR000719 |
| Pfam | PF00106 | short chain dehydrogenase | 75 | 270 | 9.0E-44 | IPR002347 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 825 | 1120 | 1.17E-44 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 395 | 719 | 1.94E-44 | - |
| SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 74 | 294 | 3.0E-49 | IPR036291 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 611 | 755 | 1.8E-18 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 816 | 926 | 2.8E-21 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 927 | 1137 | 1.9E-29 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 393 | 610 | 3.0E-42 | IPR032675 |
| Gene3D | G3DSA:3.40.50.720 | - | 73 | 312 | 2.6E-52 | - |
| SMART | SM00220 | serkin_6 | 844 | 1121 | 4.8E-10 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 568 | 590 | 7.350022 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 844 | 1120 | 25.940849 | IPR000719 |
| ProSitePatterns | PS00061 | Short-chain dehydrogenases/reductases family signature. | 214 | 242 | - | IPR020904 |
| PRINTS | PR00080 | Short-chain dehydrogenase/reductase (SDR) superfamily signature | 227 | 246 | 1.2E-5 | IPR002347 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 200 | 216 | 3.6E-19 | IPR002347 |
| PRINTS | PR00080 | Short-chain dehydrogenase/reductase (SDR) superfamily signature | 206 | 214 | 1.2E-5 | IPR002347 |
| PRINTS | PR00080 | Short-chain dehydrogenase/reductase (SDR) superfamily signature | 150 | 161 | 1.2E-5 | IPR002347 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 74 | 91 | 3.6E-19 | IPR002347 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 150 | 161 | 3.6E-19 | IPR002347 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 251 | 268 | 3.6E-19 | IPR002347 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 227 | 246 | 3.6E-19 | IPR002347 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03770.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_020256025.1 | probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 isoform X2 [Asparagus officinalis] | 0 |
| Q8LFN2 | Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 OS=Arabidopsis thaliana OX=3702 GN=At3g03770 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1FCK6 | Protein kinase domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C03F4730 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg1488 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11455 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah006602 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg201, Sbi_jg36341 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4410 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00029155 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl25325, Sgl25326, Sgl30503 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000010860, gene:ENSEOMG00000029459 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0013360, CQ.Regalona.r1.4BG0016080 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30168980 |
| Apiaceae | Apium graveolens | 1 | Ag6G01939 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G020930 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103697059, gene-LOC120104100 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.473.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G22564 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G04900.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013856m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g37910.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g001910.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1595 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1630 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g00450 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0103s00010.v1.0, Dusal.0103s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g10420 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.872 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014731 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G31532 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1289, BH01.1336, CH01.1384 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0223440, gene-QOZ80_3BG0268270 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0332930.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_063274 |
| Poaceae | Oryza coarctata | 1 | Oco05G019290 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g45194.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G139600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0104581, Pt_Chr0104618 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr01G009000, Chr07G024030, Chr12G028140 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G030900, Tel7E01G138500 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC4AG040840, gene_TRIDC4AG040850 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS4A02G261200.1, TraesCS4A02G299400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb218390_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-20534 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3153 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG04.2548, evm.TU.LG08.157, evm.TU.LG13.1033 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g01100 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1214 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3874 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17282 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18779 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.492 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005950 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12395 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5509 |
| Salicaceae | Populus euphratica | 1 | populus_peu06036 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132608726 |
| Solanaceae | Solanum chilense | 1 | SOLCI005800600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020324 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_18011 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1377 |
| Zosteraceae | Zostera marina | 1 | Zosma05g32990.v3.1 |