Basic Information
Locus ID:
AsparagusV1_03.460.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Blue copper
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 10159774 | 10164429 | - | AsparagusV1_03.460.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.94 | 32,244.67 Da | 25.53 | 66.70 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04216 | Phytocyanin | 56 | 141 | 2.79117E-27 | - |
| Pfam | PF02298 | Plastocyanin-like domain | 65 | 134 | 8.9E-17 | IPR003245 |
| SUPERFAMILY | SSF49503 | Cupredoxins | 4 | 43 | 3.94E-7 | IPR008972 |
| SUPERFAMILY | SSF49503 | Cupredoxins | 55 | 141 | 4.72E-20 | IPR008972 |
| Gene3D | G3DSA:2.60.40.420 | - | 1 | 42 | 6.4E-6 | IPR008972 |
| Gene3D | G3DSA:2.60.40.420 | - | 55 | 135 | 1.6E-19 | IPR008972 |
| ProSiteProfiles | PS51485 | Phytocyanin domain profile. | 1 | 40 | 14.928297 | IPR003245 |
| ProSiteProfiles | PS51485 | Phytocyanin domain profile. | 55 | 157 | 20.832253 | IPR003245 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G17675.1 | Cupredoxin superfamily protein. Encodes a Plantacyanin/Basic blue family protein | 0 |
| RefSeq | XP_020255103.1 | lamin-like protein [Asparagus officinalis] | 0 |
| A0A0M4FTF3 | Blue copper protein OS=Petunia hybrida OX=4102 GN=BCP PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1FA34 | Phytocyanin domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C03F4600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology