Basic Information
Locus ID:
AsparagusV1_03.441.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 9642765 | 9682430 | - | AsparagusV1_03.441.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 192,923.89 Da | 45.70 | 79.26 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 628 | 751 | 1.71255E-39 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 769 | 1097 | 9.66722E-165 | - |
| Pfam | PF00850 | Histone deacetylase domain | 218 | 506 | 3.3E-90 | IPR023801 |
| Pfam | PF00917 | MATH domain | 633 | 753 | 4.0E-19 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 1196 | 1448 | 2.7E-76 | IPR024729 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 1458 | 1648 | 8.5E-53 | IPR029346 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 771 | 1092 | 4.2E-45 | IPR001394 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 197 | 544 | 8.63E-109 | IPR023696 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 766 | 1122 | 1.04E-96 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 625 | 761 | 3.11E-41 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1256 | 1373 | 2.9E-43 | - |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 192 | 564 | 1.0E-133 | IPR037138 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 768 | 1096 | 1.2E-88 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 625 | 767 | 2.9E-52 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 1374 | 1471 | 4.7E-28 | - |
| SMART | SM00061 | math_3 | 628 | 732 | 1.3E-20 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 626 | 751 | 37.54808 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 771 | 1095 | 40.289238 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 1011 | 1028 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 772 | 787 | - | IPR018200 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 135 | 154 | - | IPR001876 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 441 | 451 | 9.8E-14 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 353 | 368 | 9.8E-14 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 320 | 343 | 9.8E-14 | IPR000286 |
| Coils | Coil | Coil | 1111 | 1131 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_020276593.1 | ubiquitin carboxyl-terminal hydrolase 12-like [Asparagus officinalis] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5P1F7B3 | ubiquitinyl hydrolase 1 OS=Asparagus officinalis OX=4686 GN=A4U43_C03F4410 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology