Basic Information
Locus ID:
AsparagusV1_03.3048.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Short Name:
TBL26
Description:
trichome birefringence-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 107412693 | 107428788 | + | AsparagusV1_03.3048.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 30,479.10 Da | 38.16 | 75.91 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 62 | 103 | 5.2E-7 | IPR001245 |
| Pfam | PF13839 | GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p | 168 | 269 | 1.9E-13 | IPR026057 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 54 | 103 | 3.77E-7 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 47 | 114 | 2.7E-9 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 36 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G01080.1 | TRICHOME BIREFRINGENCE-LIKE 26. Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication). | 0 |
| RefSeq | XP_020255389.1 | protein trichome birefringence-like 25 [Asparagus officinalis] | 0 |
| O04621 | Protein trichome birefringence-like 26 OS=Arabidopsis thaliana OX=3702 GN=TBL26 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1FF16 | PK_Tyr_Ser-Thr domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C03F30480 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.3046.V1.1, AsparagusV1_03.3048.V1.1 |
| Brassicaceae | Brassica nigra | 1 | BniB04g013020.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1488 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1478 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-15456 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23658 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g16320 |