Basic Information
Locus ID:
AsparagusV1_03.3046.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Short Name:
TBL26
Description:
GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 107195430 | 107196148 | + | AsparagusV1_03.3046.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 23,439.06 Da | 46.99 | 64.51 | -0.42 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G01080.1 | TRICHOME BIREFRINGENCE-LIKE 26. Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication). | 0 |
| RefSeq | XP_020255389.1 | protein trichome birefringence-like 25 [Asparagus officinalis] | 0 |
| O04621 | Protein trichome birefringence-like 26 OS=Arabidopsis thaliana OX=3702 GN=TBL26 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1FEW7 | NAD(P)-binding protein OS=Asparagus officinalis OX=4686 GN=A4U43_C03F30460 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.3046.V1.1, AsparagusV1_03.3048.V1.1 |
| Brassicaceae | Brassica nigra | 1 | BniB04g013020.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1488 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1478 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-15456 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23658 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g16320 |