Basic Information
Locus ID:
AsparagusV1_03.2987.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 104986030 | 105008098 | + | AsparagusV1_03.2987.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 108,947.45 Da | 31.13 | 93.93 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 17 | 297 | 3.13862E-68 | - |
| Pfam | PF04053 | Coatomer WD associated region | 319 | 763 | 1.3E-160 | IPR006692 |
| Pfam | PF00400 | WD domain, G-beta repeat | 177 | 215 | 9.2E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 220 | 256 | 1.5E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 134 | 171 | 3.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 91 | 127 | 1.7E-5 | IPR001680 |
| SUPERFAMILY | SSF101898 | NHL repeat | 223 | 492 | 3.92E-17 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 3 | 297 | 1.45E-78 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 11 | 300 | 8.9E-113 | IPR015943 |
| Gene3D | G3DSA:1.25.40.470 | - | 590 | 798 | 9.2E-81 | - |
| SMART | SM00320 | WD40_4 | 131 | 171 | 3.1E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 88 | 127 | 1.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 46 | 85 | 1.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 218 | 257 | 6.1E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 174 | 215 | 2.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 4 | 43 | 0.44 | IPR001680 |
| PIRSF | PIRSF005567 | Beta'-COP | 2 | 871 | 0.0 | IPR016453 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 138 | 180 | 13.616343 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 225 | 256 | 12.710129 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 181 | 218 | 8.781968 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 95 | 127 | 10.601049 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 181 | 224 | 11.778342 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 225 | 266 | 15.788527 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 95 | 127 | 12.74747 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 138 | 172 | 11.181047 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 11 | 52 | 8.703868 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 158 | 172 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 202 | 216 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 244 | 258 | 1.3E-6 | IPR020472 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G52360.1 | Coatomer, beta' subunit. | 0 |
| RefSeq | XP_020244249.1 | coatomer subunit beta'-1-like isoform X2 [Asparagus officinalis] | 0 |
| Q9C827 | Coatomer subunit beta'-2 OS=Arabidopsis thaliana OX=3702 GN=At1g52360 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1FE02 | Coatomer subunit beta' OS=Asparagus officinalis OX=4686 GN=A4U43_C03F29870 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology