Basic Information
Locus ID:
AsparagusV1_03.2916.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
phosphatase 2C
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 101877043 | 101923889 | - | AsparagusV1_03.2916.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 98,967.19 Da | 48.75 | 83.51 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00143 | PP2Cc | 70 | 433 | 4.71344E-50 | IPR001932 |
| Pfam | PF00481 | Protein phosphatase 2C | 204 | 426 | 2.3E-34 | IPR001932 |
| Pfam | PF00069 | Protein kinase domain | 570 | 857 | 7.9E-23 | IPR000719 |
| SUPERFAMILY | SSF81606 | PP2C-like | 65 | 434 | 1.01E-52 | IPR036457 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 547 | 860 | 5.12E-31 | IPR011009 |
| Gene3D | G3DSA:3.60.40.10 | - | 60 | 439 | 4.6E-66 | IPR036457 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 617 | 858 | 2.2E-32 | - |
| SMART | SM00332 | PP2C_4 | 56 | 431 | 3.3E-48 | IPR001932 |
| SMART | SM00220 | serkin_6 | 525 | 857 | 2.8E-10 | IPR000719 |
| ProSiteProfiles | PS51746 | PPM-type phosphatase domain profile. | 64 | 433 | 42.068855 | IPR001932 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 491 | 857 | 19.778425 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 633 | 645 | - | IPR008271 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G63340.7 | - | 0 |
| RefSeq | XP_020258914.1 | uncharacterized protein LOC109835349 isoform X1 [Asparagus officinalis] | 0 |
| A3CCP9 | Putative protein phosphatase 2C 76 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0586001 PE=3 SV=2 | 0 | |
| TrEMBL | A0A5P1FDQ9 | protein-serine/threonine phosphatase OS=Asparagus officinalis OX=4686 GN=A4U43_C03F29160 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg35350, jg8759 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_13535, gene_19362 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah000315, Ah000316 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g119940, BVRB_5g119960 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg31680, Sbi_jg31682, Sbi_jg57618, Sbi_jg57619 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg25311, Seu_jg25312 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00025823, GOSA_00025824, GOSA_00025825 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl54248, Sgl54249, Sgl54250, Sgl59594, Sgl59595 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000004831, gene:ENSEOMG00000005668 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.5AG0025280, CQ.Regalona.r1.5AG0025290 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30026640 |
| Apiaceae | Apium graveolens | 2 | Ag10G00711, Ag10G00712 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G000930, scaffold000566G000060 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718236 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.2916.V1.1, AsparagusV1_08.430.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri10G03474, Ftri10G30544, Ftri10G33054 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G63320.1, AT3G63340.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005760m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g00200.v2.2, Sp5g00210.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g061060.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G0369, Ceq06G2067 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl04G0474, Cgl06G2182, Cgl06G2183, Cgl06G2184 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g01030 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.1136, evm.TU.LG04.1137 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024709 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G10329 |
| Poaceae | Echinochloa crus-galli | 3 | AH04.1780, BH04.1811, CH04.2043 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0684000, gene-QOZ80_9BG0709990 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0723360.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_066418 |
| Poaceae | Oryza coarctata | 1 | Oco21G007760 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g52810.3, LOC_Os11g37540.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G184500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0103179 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr07G015670, Chr31G007220 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G667400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG054870, gene_TRIDC7BG047620 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G395000.1, TraesCS7B02G297000.2 ... |
| Poaceae | Zea mays | 5 | Zm00001eb114480_P001, Zm00001eb114500_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-46177, nbis-gene-46178 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19008 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2843, evm.TU.LG01.2845 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g02190 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1031 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11321 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10701 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.331 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013893 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9957 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19738, nbisL1-mrna-24777 |
| Salicaceae | Populus euphratica | 2 | populus_peu15093, populus_peu15094 |
| Solanaceae | Lycium barbarum | 5 | gene-LOC132607989, gene-LOC132610787, gene-LOC132620401 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI002232500 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107022517, gene-LOC107022754, gene-LOC107031575 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_17359, gene_6380 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G0814, TC07G2634 |
| Zosteraceae | Zostera marina | 1 | Zosma06g26550.v3.1 |