Basic Information
Locus ID:
AsparagusV1_03.2897.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
protein At1g32220, chloroplastic-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 101134067 | 101138791 | - | AsparagusV1_03.2897.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 19,841.39 Da | 35.90 | 96.85 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01370 | NAD dependent epimerase/dehydratase family | 44 | 73 | 9.0E-5 | IPR001509 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 106 | 140 | 1.2E-4 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 106 | 173 | 3.63E-5 | - |
| SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 40 | 75 | 4.3E-7 | IPR036291 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 104 | 174 | 8.7E-13 | IPR032675 |
| Gene3D | G3DSA:3.40.50.720 | - | 42 | 95 | 3.5E-7 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10730.1 | NAD(P)-binding Rossmann-fold superfamily protein. | 0 |
| RefSeq | XP_020265455.1 | uncharacterized protein At1g32220, chloroplastic-like isoform X4 [Asparagus officinalis] | 0 |
| Q6K4T4 | LRR receptor kinase SERK2 OS=Oryza sativa subsp. japonica OX=39947 GN=SERK4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5P1FDP9 | Epimerase domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C03F28970 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31112 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_03.2897.V1.1, AsparagusV1_04.934.V1.1 ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G2321 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl05G1692, Cgl05G2457, Cgl05G2491 |
| Poaceae | Echinochloa crus-galli | 1 | BH01.1045 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2AG0109500 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0006820.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_066036 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-17336 |