Basic Information
Locus ID:
AsparagusV1_03.2544.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 80210855 | 80214728 | - | AsparagusV1_03.2544.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.78 | 60,563.56 Da | 37.38 | 82.74 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 58 | 316 | 2.33815E-137 | - |
| Pfam | PF13499 | EF-hand domain pair | 364 | 423 | 8.1E-8 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 59 | 317 | 3.3E-76 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 435 | 498 | 1.9E-13 | IPR002048 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 58 | 327 | 1.48E-86 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 346 | 524 | 2.4E-43 | IPR011992 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 145 | 326 | 8.4E-60 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 327 | 500 | 1.3E-51 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 61 | 144 | 4.3E-28 | - |
| SMART | SM00054 | efh_1 | 364 | 392 | 6.4E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 472 | 500 | 7.0E-7 | IPR002048 |
| SMART | SM00220 | serkin_6 | 59 | 317 | 8.0E-99 | IPR000719 |
| SMART | SM00054 | efh_1 | 400 | 428 | 0.68 | IPR002048 |
| SMART | SM00054 | efh_1 | 436 | 464 | 0.4 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 360 | 395 | 13.760229 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 396 | 431 | 9.464338 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 59 | 317 | 49.572899 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 468 | 503 | 14.680779 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 432 | 467 | 11.695971 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 409 | 421 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 179 | 191 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 445 | 457 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 65 | 88 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 481 | 493 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19450.1 | calcium-dependent protein kinase 19. calcium-dependent protein kinase (CDPK19) mRNA, complete | 0 |
| RefSeq | XP_020257982.1 | calcium-dependent protein kinase 20-like isoform X1 [Asparagus officinalis] | 0 |
| Q84SL0 | Calcium-dependent protein kinase 20 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK20 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5P1FFQ9 | Calcium-dependent protein kinase OS=Asparagus officinalis OX=4686 GN=A4U43_C03F25440 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology