Basic Information
Locus ID:
AsparagusV1_03.2446.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
strubbelig-receptor family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 73784716 | 73787256 | + | AsparagusV1_03.2446.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 13,220.06 Da | 63.85 | 80.69 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 81 | 2.91E-10 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 108 | 2.0E-15 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 97 | 116 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14350.2 | STRUBBELIG-receptor family 7. | 0 |
| RefSeq | XP_020258856.1 | protein STRUBBELIG-RECEPTOR FAMILY 6-like [Asparagus officinalis] | 0 |
| Q9LUL4 | Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsis thaliana OX=3702 GN=SRF7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1FGY1 | Protein kinase domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C03F24460 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah025700 |
| Apiaceae | Apium graveolens | 1 | Ag9G02435 |
| Arecaceae | Cocos nucifera | 2 | scaffold004835G000020, scaffold032126G000040 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.2446.V1.1, AsparagusV1_05.2985.V1.1 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1051 |
| Hydrocharitaceae | Thalassia testudinum | 4 | gene.Thate01g25420, gene.Thate04g17100, gene.Thate04g19200 ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005988 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G29776 |
| Poaceae | Echinochloa crus-galli | 1 | AH05.3179 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-31898, nbis-gene-361 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-21262, nbisL1-mrna-22663 |
| Salicaceae | Populus euphratica | 1 | populus_peu10399 |