halophFGD

Basic Information

Locus ID: AsparagusV1_03.2350.V1.1

Species & Taxonomic ID: Asparagus officinalis & 4686

Genome Assembly: GCA_001876935.1

Description: Squalene epoxidase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	66656816	66659808	+	AsparagusV1_03.2350.V1.1

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.99	43,519.65 Da	46.23	101.84	0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF08491	Squalene epoxidase	132	362	2.2E-98	IPR013698
SUPERFAMILY	SSF51905	FAD/NAD(P)-binding domain	30	314	4.33E-23	IPR036188
Gene3D	G3DSA:3.50.50.60	-	22	295	1.5E-15	IPR036188

Gene Ontology

Molecular Function:

GO:0004506 (squalene monooxygenase activity) GO:0050660 (flavin adenine dinucleotide binding)

Cellular Component:

GO:0016020 (membrane)

KEGG Pathway

KO Term:

K00511 (squalene monooxygenase [EC:1.14.14.17])

Pathway:

ko00100 (Steroid biosynthesis) map00100 (Steroid biosynthesis) ko00909 (Sesquiterpenoid and triterpenoid biosynthesis) map00909 (Sesquiterpenoid and triterpenoid biosynthesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites)

Reaction:

R02874 (Squalene + Oxygen + [Reduced NADPH---hemoprotein reductase] <=> (S)-2,3-Epoxysqualene + [Oxidized NADPH---hemoprotein reductase] + H2O)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G58440.1	FAD/NAD(P)-binding oxidoreductase family protein. Encodes a putative protein that has been speculated, based on sequence similarities, to have squalene monooxygenase activity.
RefSeq	XP_020257858.1	squalene monooxygenase-like [Asparagus officinalis]
Swiss-Prot	O48651	Squalene monooxygenase SE1 OS=Panax ginseng OX=4054 GN=SQE1 PE=2 SV=1
TrEMBL	A0A5P1FEA3	Squalene monooxygenase OS=Asparagus officinalis OX=4686 GN=A4U43_C03F23500 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	7	jg19618, jg22685, jg26313, jg28874, jg30178, jg30181 ... jg39906
Aizoaceae	Mesembryanthemum crystallinum	2	gene_24024, gene_8566
Amaranthaceae	Atriplex hortensis	2	Ah027502, Ah036603
Amaranthaceae	Beta vulgaris	2	BVRB_1g014580, BVRB_6g128510
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg39620, Sbi_jg52602, Sbi_jg54722
Amaranthaceae	Salicornia europaea	2	Seu_jg14725, Seu_jg9213
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00013239, GOSA_00013264
Amaranthaceae	Suaeda glauca	4	Sgl12582, Sgl17852, Sgl34552, Sgl39967
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000003226, gene:ENSEOMG00000016502 ... gene:ENSEOMG00000028137, gene:ENSEOMG00000036463
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0020720, CQ.Regalona.r1.1BG0008220 ... CQ.Regalona.r1.6AG0026590, CQ.Regalona.r1.6BG0028000
Anacardiaceae	Pistacia vera	6	pistato.v30042770, pistato.v30162400, pistato.v30162440 ... pistato.v30162450, pistato.v30162510, pistato.v30204720
Apiaceae	Apium graveolens	5	Ag1G00657, Ag1G01872, Ag3G00102, Ag6G02915, Ag8G01962
Arecaceae	Cocos nucifera	1	COCNU_06G019630
Arecaceae	Phoenix dactylifera	2	gene-LOC103707523, gene-LOC103713674
Asparagaceae	Asparagus officinalis	2	AsparagusV1_03.2350.V1.1, AsparagusV1_03.754.V1.1
Asteraceae	Flaveria trinervia	6	Ftri18G31436, Ftri1G27905, Ftri3G11054, Ftri4G28981 ... Ftri6G23310, Ftri8G10115
Brassicaceae	Arabidopsis thaliana	3	AT1G58440.1, AT2G22830.1, AT4G37760.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10000099m.g.v1.0, Thhalv10023406m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp2g05160.v2.2, Sp4g01850.v2.2, Sp7g35410.v2.2 ... SpUn0042_0010.v2.2
Brassicaceae	Brassica nigra	3	BniB01g020980.2N, BniB04g019450.2N, BniB05g001290.2N
Casuarinaceae	Casuarina equisetifolia	11	Ceq01G0349, Ceq01G0350, Ceq01G0351, Ceq01G0352, Ceq01G1259 ... Ceq01G1260, Ceq03G1250, Ceq06G0445, Ceq07G1884, Ceq07G1886, Ceq09G0504
Casuarinaceae	Casuarina glauca	10	Cgl01G0356, Cgl01G0357, Cgl01G0358, Cgl01G1405, Cgl03G1356 ... Cgl03G1469, Cgl06G0300, Cgl06G0462, Cgl07G2058, Cgl09G0544
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno01g14740
Dunaliellaceae	Dunaliella salina	1	Dusal.0277s00002.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g31110, gene.Thate02g31130, gene.Thate06g13850
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-10581, nbisL1-mrna-5631, nbisL1-mrna-8811
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG02.2602, evm.TU.LG03.876, evm.TU.LG06.302
Plantaginaceae	Plantago ovata	4	Pov_00001659, Pov_00007821, Pov_00012042, Pov_00037100
Plumbaginaceae	Limonium bicolor	3	Lb2G08638, Lb3G21341, Lb7G32955
Poaceae	Echinochloa crus-galli	3	AH01.4447, CH01.5055, Contig192.86
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_3AG0239720, gene-QOZ80_3BG0288300
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.4HG0394640.1
Poaceae	Lolium multiflorum	1	gene-QYE76_069627
Poaceae	Oryza coarctata	4	Oco05G007250, Oco05G007260, Oco06G007500, Oco06G007510
Poaceae	Oryza sativa	2	LOC_Os03g12900.1, LOC_Os03g12910.1
Poaceae	Paspalum vaginatum	1	gene-BS78_01G429800
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0101875
Poaceae	Sporobolus alterniflorus	4	Chr01G028480, Chr04G000860, Chr07G001040, Chr12G010960
Poaceae	Thinopyrum elongatum	1	Tel4E01G406900
Poaceae	Triticum dicoccoides	2	gene_TRIDC4AG009260, gene_TRIDC4BG041600
Poaceae	Triticum aestivum	3	TraesCS4A02G059900.1, TraesCS4B02G235500.1 ... TraesCS4D02G236900.1
Poaceae	Zea mays	2	Zm00001eb009510_P002, Zm00001eb399370_P003
Poaceae	Zoysia japonica	1	nbis-gene-3992
Poaceae	Zoysia macrostachya	2	Zma_g1724, Zma_g4101
Portulacaceae	Portulaca oleracea	4	evm.TU.LG03.1609, evm.TU.LG03.591, evm.TU.LG12.1139 ... evm.TU.LG12.280
Posidoniaceae	Posidonia oceanica	2	gene.Posoc03g27500, gene.Posoc04g07220
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_7_RagTag.851, evm.TU.Scaffold_8_RagTag.881
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-19307, nbisL1-mrna-9350
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-14452, nbisL1-mrna-19413
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-20602, nbisL1-mrna-6681
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000002l.655, evm.TU.utg000018l.260
Rhizophoraceae	Kandelia obovata	2	Maker00002993, Maker00010735
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-11464, nbisL1-mrna-13111
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-10099, nbisL1-mrna-17098
Salicaceae	Populus euphratica	5	populus_peu21917, populus_peu23744, populus_peu29075 ... populus_peu32097, populus_peu37081
Solanaceae	Lycium barbarum	2	gene-LOC132621802, gene-LOC132627737
Solanaceae	Solanum chilense	1	SOLCI001794800
Solanaceae	Solanum pennellii	3	gene-LOC107011971, gene-LOC107011974, gene-LOC107017670
Tamaricaceae	Reaumuria soongarica	2	STRG.31139_chr11_+, gene_9275
Tamaricaceae	Tamarix chinensis	2	TC04G1977, TC04G2730
Zosteraceae	Zostera marina	1	Zosma06g01910.v3.1