Basic Information
Locus ID:
AsparagusV1_03.2251.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Short Name:
LYK4
Description:
lysM domain receptor-like kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 61404368 | 61406290 | + | AsparagusV1_03.2251.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.48 | 70,644.46 Da | 43.74 | 88.81 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 189 | 233 | 4.25338E-4 | IPR018392 |
| Pfam | PF01476 | LysM domain | 190 | 234 | 3.5E-7 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 387 | 632 | 1.7E-40 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 346 | 634 | 4.37E-63 | IPR011009 |
| SUPERFAMILY | SSF54106 | LysM domain | 188 | 234 | 3.4E-5 | IPR036779 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 428 | 640 | 4.0E-52 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 179 | 249 | 3.5E-7 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 340 | 427 | 1.1E-14 | - |
| SMART | SM00257 | LysM_2 | 122 | 169 | 1.8 | IPR018392 |
| SMART | SM00257 | LysM_2 | 189 | 234 | 0.024 | IPR018392 |
| SMART | SM00220 | serkin_6 | 364 | 638 | 3.5E-21 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 121 | 168 | 8.620562 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 337 | 638 | 32.103275 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 188 | 233 | 11.073361 | IPR018392 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 473 | 485 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 263 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 259 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23770.1 | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein. | 0 |
| RefSeq | XP_020257799.1 | lysM domain receptor-like kinase 4 [Asparagus officinalis] | 0 |
| O64825 | LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana OX=3702 GN=LYK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1FD45 | Protein kinase domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C03F22510 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology