Basic Information
Locus ID:
AsparagusV1_03.2207.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 58753528 | 58774134 | - | AsparagusV1_03.2207.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 148,785.69 Da | 51.29 | 75.06 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1181 | 1291 | 8.98551E-54 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 583 | 911 | 1.37278E-83 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1179 | 1281 | 6.9E-16 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 603 | 988 | 8.9E-67 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 567 | 911 | 2.66E-45 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 920 | 1338 | 8.42E-55 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1025 | 1072 | 2.29E-10 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 670 | 763 | 8.4E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 557 | 645 | 1.0E-10 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 928 | 1339 | 6.4E-62 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1022 | 1078 | 9.5E-10 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 784 | 927 | 1.1E-29 | IPR038718 |
| SMART | SM00490 | helicmild6 | 1198 | 1281 | 9.6E-17 | IPR001650 |
| SMART | SM00487 | ultradead3 | 579 | 890 | 2.0E-26 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1174 | 1334 | 15.358865 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 598 | 873 | 12.156382 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1027 | 1063 | 10.6304 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 1042 | 1051 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 758 | 801 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_020257733.1 | helicase-like transcription factor CHR28 isoform X1 [Asparagus officinalis] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1FH65 | Helicase ATP-binding domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C03F22070 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology