Basic Information
Locus ID:
AsparagusV1_03.2173.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Chromo (CHRromatin Organisation MOdifier) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 56380469 | 56389512 | + | AsparagusV1_03.2173.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.57 | 48,328.57 Da | 70.83 | 71.95 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 305 | 332 | 1.2E-5 | IPR023780 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 289 | 333 | 1.1E-6 | IPR016197 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 295 | 425 | 1.2E-23 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 128 | 187 | 2.0E-7 | IPR043151 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 298 | 328 | 8.792701 | IPR000953 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 312 | 332 | - | IPR023779 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 70 | - | - |
| Coils | Coil | Coil | 63 | 103 | - | - |
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80740.1 | chromomethylase 1. ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation. | 0 |
| RefSeq | XP_020246348.1 | DNA (cytosine-5)-methyltransferase CMT3-like [Asparagus officinalis] | 0 |
| Q8LPU5 | DNA (cytosine-5)-methyltransferase 3 OS=Zea mays OX=4577 GN=DMT105 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1FBZ4 | Chromo domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C03F21730 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology