Basic Information
Locus ID:
AsparagusV1_03.2115.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Jacalin-like lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 53843164 | 53857371 | - | AsparagusV1_03.2115.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 67,010.75 Da | 29.27 | 71.78 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 467 | 594 | 4.77032E-39 | IPR033734 |
| CDD | cd09612 | Jacalin | 270 | 399 | 4.58537E-36 | IPR033734 |
| CDD | cd09612 | Jacalin | 47 | 176 | 6.63643E-41 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 270 | 399 | 6.3E-25 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 464 | 594 | 2.9E-29 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 47 | 176 | 5.7E-33 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 40 | 176 | 4.32E-40 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 453 | 593 | 1.01E-38 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 260 | 400 | 5.36E-37 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 245 | 399 | 6.4E-47 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 27 | 177 | 3.7E-49 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 449 | 594 | 3.6E-50 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 464 | 595 | 2.7E-35 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 47 | 178 | 1.3E-40 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 270 | 401 | 9.4E-34 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 259 | 401 | 44.858654 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 453 | 595 | 48.488403 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 36 | 178 | 49.895283 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.3 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_020257669.1 | jacalin-related lectin 3 isoform X1 [Asparagus officinalis] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1FCS5 | Jacalin-type lectin domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C03F21150 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology