Basic Information
Locus ID:
AsparagusV1_03.2023.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
WRKY transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 50597263 | 50602789 | - | AsparagusV1_03.2023.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.67 | 38,127.45 Da | 57.86 | 52.87 | -1.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03106 | WRKY DNA -binding domain | 77 | 133 | 1.2E-24 | IPR003657 |
| Pfam | PF03106 | WRKY DNA -binding domain | 226 | 283 | 7.3E-26 | IPR003657 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 74 | 135 | 3.01E-25 | IPR036576 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 217 | 285 | 3.66E-29 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 210 | 286 | 3.6E-35 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 65 | 136 | 4.0E-27 | IPR036576 |
| SMART | SM00774 | WRKY_cls | 225 | 284 | 5.2E-39 | IPR003657 |
| SMART | SM00774 | WRKY_cls | 76 | 134 | 1.1E-33 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 77 | 135 | 22.102091 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 220 | 285 | 37.148964 | IPR003657 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 144 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 206 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 211 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 145 | 159 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13960.1 | WRKY DNA-binding protein 4. Encodes WRKY DNA-binding protein 4 (WRKY4). | 0 |
| RefSeq | XP_020257592.1 | probable WRKY transcription factor 4 [Asparagus officinalis] | 0 |
| Q9XI90 | Probable WRKY transcription factor 4 OS=Arabidopsis thaliana OX=3702 GN=WRKY4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5P1FFV5 | WRKY transcription factor OS=Asparagus officinalis OX=4686 GN=A4U43_C03F20230 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology