Basic Information
Locus ID:
AsparagusV1_03.202.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Short Name:
SDH2-3
Description:
2Fe-2S iron-sulfur cluster binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 4038723 | 4054566 | - | AsparagusV1_03.202.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 18,548.86 Da | 36.04 | 73.81 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 6 | 110 | 1.6E-9 | IPR000719 |
| SUPERFAMILY | SSF46548 | alpha-helical ferredoxin | 137 | 167 | 9.94E-7 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 6 | 104 | 5.05E-16 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 3 | 152 | 6.5E-19 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 168 | 11.66551 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
ko00020 (Citrate cycle (TCA cycle))
map00020 (Citrate cycle (TCA cycle))
ko00190 (Oxidative phosphorylation)
map00190 (Oxidative phosphorylation)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01200 (Carbon metabolism)
map01200 (Carbon metabolism)
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G48380.1 | BAK1-interacting receptor-like kinase 1. Encodes a BAK1-interacting receptor-like kinase named BIR1. Negatively regulates multiple plant resistance signaling pathways, one of which is the SOBIR1(AT2G31880)-dependent pathway. | 0 |
| RefSeq | XP_020243644.1 | probable inactive receptor kinase At1g27190 [Asparagus officinalis] | 0 |
| Q9ASS4 | Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 OS=Arabidopsis thaliana OX=3702 GN=At5g48380 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1F6L6 | Protein kinase domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C03F2020 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30174020 |
| Asparagaceae | Asparagus officinalis | 9 | AsparagusV1_03.202.V1.1, AsparagusV1_04.769.V1.1 ... |