Basic Information
Locus ID:
AsparagusV1_03.2008.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 50243032 | 50246277 | + | AsparagusV1_03.2008.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 112,747.61 Da | 42.47 | 100.39 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 778 | 1046 | 4.38101E-87 | - |
| Pfam | PF13855 | Leucine rich repeat | 168 | 226 | 9.1E-9 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 775 | 972 | 2.8E-41 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 92 | 646 | 1.5E-63 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 750 | 1043 | 4.05E-73 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 80 | 404 | 2.3E-79 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 848 | 1047 | 6.8E-57 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 433 | 673 | 4.1E-54 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 739 | 847 | 2.2E-25 | - |
| SMART | SM00369 | LRR_typ_2 | 261 | 285 | 10.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 532 | 556 | 54.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 189 | 213 | 17.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 118 | 142 | 270.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 214 | 237 | 220.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 508 | 531 | 390.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 772 | 1050 | 5.2E-31 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 604 | 627 | 44.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 772 | 1046 | 38.096088 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 892 | 904 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 778 | 800 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 168 | 181 | 6.4E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 261 | 274 | 6.4E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02130.2 | - | 0 |
| RefSeq | XP_020258680.1 | LRR receptor-like serine/threonine-protein kinase RPK2, partial [Asparagus officinalis] | 0 |
| Q9S7I6 | LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana OX=3702 GN=RPK2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1FCI3 | Protein kinase domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C03F20080 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology