Basic Information
Locus ID:
AsparagusV1_03.2000.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Chromatin structure-remodeling complex subunit RSC1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 50044118 | 50083980 | - | AsparagusV1_03.2000.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.04 | 22,766.53 Da | 49.67 | 55.61 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00628 | PHD-finger | 123 | 171 | 3.2E-10 | IPR019787 |
| Pfam | PF01426 | BAH domain | 8 | 118 | 2.4E-20 | IPR001025 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 113 | 176 | 8.64E-19 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 116 | 184 | 1.3E-19 | IPR013083 |
| Gene3D | G3DSA:2.30.30.490 | - | 5 | 115 | 1.1E-26 | IPR043151 |
| SMART | SM00439 | BAH_4 | 2 | 119 | 4.1E-37 | IPR001025 |
| SMART | SM00249 | PHD_3 | 123 | 170 | 3.5E-9 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 121 | 172 | 9.0806 | IPR019787 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 3 | 119 | 23.083303 | IPR001025 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 124 | 169 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 198 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_020257563.1 | chromatin remodeling protein EBS-like isoform X2 [Asparagus officinalis] | 0 |
| F4JL28 | Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1FBI4 | PHD-type domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C03F20000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology