Basic Information
Locus ID:
AsparagusV1_03.1900.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Short Name:
UBP16
Description:
MYND finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 46182491 | 46199158 | + | AsparagusV1_03.1900.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 114,599.85 Da | 68.03 | 63.29 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 530 | 834 | 1.42466E-128 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 531 | 833 | 3.5E-46 | IPR001394 |
| Pfam | PF01753 | MYND finger | 103 | 140 | 1.8E-8 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 99 | 142 | 4.36E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 527 | 842 | 4.32E-86 | IPR038765 |
| Gene3D | G3DSA:6.10.140.2220 | - | 94 | 143 | 3.4E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 523 | 846 | 1.1E-92 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 531 | 836 | 52.148415 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 103 | 140 | 11.844646 | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 532 | 547 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 103 | 140 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 381 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 903 | 936 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 844 | 884 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 194 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1027 | 1046 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 340 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 858 | 873 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1024 | 1046 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 353 | 370 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 201 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_020257484.1 | ubiquitin carboxyl-terminal hydrolase 17-like [Asparagus officinalis] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1FGE4 | MYND-type domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C03F19000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology