Basic Information
Locus ID:
AsparagusV1_03.1581.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 36207390 | 36208655 | - | AsparagusV1_03.1581.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 46,340.38 Da | 40.35 | 101.69 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 26 | 68 | 3.00763E-27 | - |
| Pfam | PF04564 | U-box domain | 22 | 93 | 1.7E-20 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 12 | 96 | 2.28E-30 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 102 | 399 | 1.67E-22 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 111 | 398 | 1.2E-19 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 100 | 2.5E-29 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 25 | 88 | 1.7E-30 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 21 | 95 | 39.674732 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_020257195.1 | U-box domain-containing protein 21-like [Asparagus officinalis] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1FEM7 | RING-type E3 ubiquitin transferase OS=Asparagus officinalis OX=4686 GN=A4U43_C03F15810 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology