Basic Information
Locus ID:
AsparagusV1_03.1565.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 35933322 | 35938788 | - | AsparagusV1_03.1565.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 104,066.22 Da | 33.91 | 90.73 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 9 | 317 | 3.72536E-74 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 84 | 121 | 3.8E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 126 | 163 | 1.2E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 241 | 276 | 1.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 198 | 231 | 2.7E-4 | IPR001680 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 817 | 900 | 5.6E-11 | IPR010714 |
| Pfam | PF04053 | Coatomer WD associated region | 342 | 768 | 1.8E-134 | IPR006692 |
| Pfam | PF00400 | WD domain, G-beta repeat | 45 | 79 | 4.8E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 4 | 315 | 9.57E-74 | IPR036322 |
| SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 322 | 566 | 5.1E-7 | - |
| Gene3D | G3DSA:1.25.40.470 | - | 640 | 814 | 1.8E-66 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 319 | 1.7E-125 | IPR015943 |
| SMART | SM00320 | WD40_4 | 82 | 121 | 4.1E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 279 | 317 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2 | 37 | 31.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 237 | 276 | 1.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 40 | 79 | 9.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 193 | 232 | 4.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 124 | 163 | 7.8E-11 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 47 | 82 | 10.574686 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 200 | 241 | 13.11507 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 244 | 285 | 15.120162 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 244 | 276 | 11.971952 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 89 | 121 | 10.891048 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 200 | 234 | 10.68014 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 131 | 164 | 15.320672 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 89 | 130 | 13.716598 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 131 | 164 | 12.631039 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 47 | 88 | 13.582925 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 150 | 164 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 150 | 164 | 1.5E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 108 | 122 | 1.5E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 263 | 277 | 1.5E-7 | IPR020472 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21390.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_020257177.1 | LOW QUALITY PROTEIN: coatomer subunit alpha-1-like [Asparagus officinalis] | 0 |
| Q9AUR8 | Coatomer subunit alpha-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0711400 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1FC50 | Coatomer subunit alpha OS=Asparagus officinalis OX=4686 GN=A4U43_C03F15650 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology