Basic Information
Locus ID:
AsparagusV1_03.1559.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 35745642 | 35750390 | + | AsparagusV1_03.1559.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.90 | 59,031.15 Da | 47.44 | 63.80 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 344 | 370 | 2.4E-4 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 309 | 333 | 4.3E-7 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 266 | 292 | 6.7E-10 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 258 | 290 | 8.83E-8 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 305 | 334 | 5.76E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 337 | 372 | 7.46E-5 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 301 | 336 | 1.5E-12 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 256 | 293 | 5.3E-14 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 337 | 372 | 1.4E-8 | - |
| SMART | SM00547 | zf_4 | 267 | 291 | 1.2E-7 | IPR001876 |
| SMART | SM00547 | zf_4 | 311 | 335 | 5.0E-7 | IPR001876 |
| SMART | SM00547 | zf_4 | 344 | 368 | 0.021 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 265 | 294 | 9.754972 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 342 | 371 | 9.167777 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 309 | 338 | 9.653342 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 313 | 332 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 346 | 365 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 269 | 288 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 502 | 518 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 490 | 518 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 69 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70650.1 | Ran BP2/NZF zinc finger-like superfamily protein. | 0 |
| RefSeq | XP_020257170.1 | E3 SUMO-protein ligase RanBP2 [Asparagus officinalis] | 0 |
| TrEMBL | A0A5P1FD64 | Zinc finger protein VAR3, chloroplastic OS=Asparagus officinalis OX=4686 GN=A4U43_C03F15590 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology