Basic Information
Locus ID:
AsparagusV1_03.1554.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
RhoGAP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 35601986 | 35632578 | - | AsparagusV1_03.1554.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.98 | 109,992.50 Da | 53.21 | 65.92 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00159 | RhoGAP | 208 | 290 | 1.07801E-14 | - |
| CDD | cd00821 | PH | 47 | 147 | 8.80045E-8 | - |
| Pfam | PF00169 | PH domain | 46 | 151 | 1.3E-7 | IPR001849 |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 600 | 679 | 2.3E-20 | IPR025757 |
| Pfam | PF00620 | RhoGAP domain | 208 | 289 | 3.6E-10 | IPR000198 |
| SUPERFAMILY | SSF50729 | PH domain-like | 36 | 160 | 7.77E-15 | - |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 208 | 348 | 6.28E-14 | IPR008936 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 176 | 292 | 2.3E-16 | IPR008936 |
| Gene3D | G3DSA:2.30.29.30 | - | 35 | 163 | 2.3E-11 | IPR011993 |
| SMART | SM00233 | PH_update | 45 | 154 | 6.7E-14 | IPR001849 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 199 | 382 | 10.333542 | IPR000198 |
| ProSiteProfiles | PS50003 | PH domain profile. | 44 | 152 | 13.2561 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 710 | 1008 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 446 | 555 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 404 | 419 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 990 | 1008 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 420 | 445 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 973 | 988 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 841 | 865 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 397 | 555 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 779 | 808 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 898 | 951 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 825 | 840 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 712 | 772 | - | - |
| Coils | Coil | Coil | 657 | 677 | - | - |
| Coils | Coil | Coil | 133 | 153 | - | - |
| Coils | Coil | Coil | 590 | 631 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.4 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_020257165.1 | LOW QUALITY PROTEIN: rho GTPase-activating protein REN1-like [Asparagus officinalis] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1FAW0 | PH domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C03F15540 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology