Basic Information
Locus ID:
AsparagusV1_03.1311.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Short Name:
CDPK9
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 29170367 | 29186034 | + | AsparagusV1_03.1311.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 24,098.94 Da | 46.95 | 72.12 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 126 | 176 | 2.74088E-9 | IPR002048 |
| CDD | cd00051 | EFh | 156 | 215 | 9.6496E-14 | IPR002048 |
| Pfam | PF13833 | EF-hand domain pair | 127 | 146 | 0.027 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 153 | 215 | 2.4E-8 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 127 | 216 | 6.02E-25 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 111 | 218 | 2.3E-27 | - |
| Gene3D | G3DSA:3.100.10.10 | - | 1 | 26 | 3.1E-5 | - |
| SMART | SM00054 | efh_1 | 189 | 217 | 1.1 | IPR002048 |
| SMART | SM00054 | efh_1 | 155 | 183 | 0.091 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 151 | 186 | 15.433954 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 164 | 176 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 128 | 140 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G38910.1 | calcium-dependent protein kinase 20. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_020253192.1 | calcium-dependent protein kinase 28-like isoform X1 [Asparagus officinalis] | 0 |
| Q2QX45 | Calcium-dependent protein kinase 28 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK28 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5P1FEU4 | EF-hand domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C03F13110 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 2 | Ah033093, Ah036874 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl68967 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004643, gene:ENSEOMG00000006606 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3BG0009830, CQ.Regalona.r1.7BG0018650 ... |
| Apiaceae | Apium graveolens | 2 | Ag2G01810, Ag8G00088 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1311.V1.1 |
| Brassicaceae | Brassica nigra | 2 | BniB01g043470.2N, BniB03g056960.2N |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1650 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.915 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00032026 |
| Poaceae | Echinochloa crus-galli | 1 | CH04.446 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr09G003830 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G027700 |
| Poaceae | Zea mays | 2 | Zm00001eb015740_P001, Zm00001eb168390_P001 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18442, nbisL1-mrna-18491 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5501 |
| Zosteraceae | Zostera marina | 1 | Zosma03g22750.v3.1 |