Basic Information
Locus ID:
AsparagusV1_03.1216.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Belongs to the universal ribosomal protein uS3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 26648763 | 26653025 | + | AsparagusV1_03.1216.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.47 | 25,447.26 Da | 42.55 | 99.96 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02413 | 40S_S3_KH | 15 | 95 | 4.25186E-52 | - |
| Pfam | PF00189 | Ribosomal protein S3, C-terminal domain | 128 | 180 | 1.1E-13 | IPR001351 |
| Pfam | PF07650 | KH domain | 20 | 93 | 5.6E-12 | IPR004044 |
| SUPERFAMILY | SSF54814 | Prokaryotic type KH domain (KH-domain type II) | 10 | 99 | 1.22E-25 | IPR009019 |
| SUPERFAMILY | SSF54821 | Ribosomal protein S3 C-terminal domain | 93 | 183 | 1.1E-17 | IPR036419 |
| Gene3D | G3DSA:3.30.300.20 | - | 1 | 91 | 1.9E-47 | IPR015946 |
| Gene3D | G3DSA:3.30.1140.32 | - | 126 | 211 | 2.4E-41 | IPR036419 |
| Gene3D | G3DSA:3.30.1140.32 | - | 93 | 123 | 3.8E-5 | IPR036419 |
| TIGRFAM | TIGR01008 | uS3_euk_arch: ribosomal protein uS3 | 8 | 203 | 9.5E-55 | IPR005703 |
| ProSiteProfiles | PS50823 | Type-2 KH domain profile. | 21 | 92 | 11.245741 | IPR004044 |
| ProSitePatterns | PS00548 | Ribosomal protein S3 signature. | 139 | 175 | - | IPR018280 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35530.1 | Ribosomal protein S3 family protein. | 0 |
| RefSeq | XP_020256814.1 | 40S ribosomal protein S3-3 [Asparagus officinalis] | 0 |
| Q9FJA6 | Small ribosomal subunit protein uS3x OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1FDM4 | KH type-2 domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C03F12160 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology