Basic Information
Locus ID:
AsparagusV1_03.1213.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 26605550 | 26618516 | + | AsparagusV1_03.1213.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.49 | 85,351.15 Da | 57.34 | 56.91 | -0.85 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16620 | vRING-HC-C4C4_RBBP6 | 225 | 268 | 4.34277E-17 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 229 | 268 | 2.6E-8 | - |
| Pfam | PF08783 | DWNN domain | 3 | 77 | 8.2E-17 | IPR014891 |
| SUPERFAMILY | SSF57850 | RING/U-box | 221 | 294 | 1.01E-16 | - |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 411 | 446 | 7.5E-6 | IPR036875 |
| Gene3D | G3DSA:4.10.60.10 | - | 420 | 465 | 6.4E-6 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 1.9E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 220 | 302 | 2.4E-17 | IPR013083 |
| SMART | SM00343 | c2hcfinal6 | 427 | 443 | 0.0032 | IPR001878 |
| SMART | SM00184 | ring_2 | 230 | 268 | 0.0043 | IPR001841 |
| SMART | SM01180 | DWNN_2 | 3 | 77 | 6.9E-18 | IPR014891 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 230 | 269 | 10.364846 | IPR001841 |
| ProSiteProfiles | PS51282 | DWNN domain profile. | 3 | 77 | 18.505091 | IPR014891 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 428 | 442 | 9.372511 | IPR001878 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 246 | 255 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 699 | 716 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 579 | 729 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 579 | 688 | - | - |
| Coils | Coil | Coil | 284 | 304 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_020256812.1 | E3 ubiquitin ligase PARAQUAT TOLERANCE 3-like isoform X3 [Asparagus officinalis] | 0 |
| TrEMBL | A0A5P1F9B0 | E3 ubiquitin-protein ligase RBBP6 OS=Asparagus officinalis OX=4686 GN=A4U43_C03F12130 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg23981, jg36622, jg36623 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13124 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034453 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g033930 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20394, Sbi_jg23392 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17169 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009061 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63612, Sgl68102 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000017013, gene:ENSEOMG00000017473 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0013620, CQ.Regalona.r1.2BG0015730 |
| Apiaceae | Apium graveolens | 4 | Ag4G01461, Ag6G02355, Ag7G00412, Ag9G02580 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G008840 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712693 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.1211.V1.1, AsparagusV1_03.1213.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G14301, Ftri3G01955 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2138 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2282 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.683 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013402 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G233500 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.828, evm.TU.LG15.104 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g04140 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1102 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25869 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4269 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1330 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.706 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000894 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14885 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1070 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635973 |
| Solanaceae | Solanum chilense | 1 | SOLCI003986400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026827 |
| Tamaricaceae | Reaumuria soongarica | 1 | MSTRG.8429_chr05_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1457 |
| Zosteraceae | Zostera marina | 1 | Zosma06g13240.v3.1 |