Basic Information
Locus ID:
AsparagusV1_03.1130.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Transmembrane E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 24653577 | 24671205 | + | AsparagusV1_03.1130.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.96 | 63,080.21 Da | 54.64 | 94.99 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 500 | 545 | 9.0E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 482 | 549 | 5.52E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 486 | 551 | 1.5E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 500 | 545 | 0.0057 | IPR011016 |
| SMART | SM00184 | ring_2 | 501 | 544 | 4.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 501 | 545 | 12.135206 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G20650.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_020256712.1 | transmembrane E3 ubiquitin-protein ligase 1-like isoform X2 [Asparagus officinalis] | 0 |
| Q500V2 | Transmembrane E3 ubiquitin-protein ligase FLY2 OS=Arabidopsis thaliana OX=3702 GN=FLY2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1FAY4 | RING-type domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C03F11300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg21349 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21080 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah012260 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g205120 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11775, Sbi_jg46638 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21004 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00016852, GOSA_00016853 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl79976, Sgl82428 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000016676, gene:ENSEOMG00000036364 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0008760, CQ.Regalona.r1.9BG0015620 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30020050 |
| Apiaceae | Apium graveolens | 1 | Ag4G02061 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G012450, COCNU_14G008440 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103695890, gene-LOC103707147 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1130.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G33293 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G20650.1, AT4G28370.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10002192m.g.v1.0, Thhalv10024798m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g33900.v2.2, Sp7g26330.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g011760.2N, BniB03g070300.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2651 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2738 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno13g01440 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g22320 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.1812, evm.TU.LG05.117 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004553 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G28548 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3092, BH03.3269, CH03.3462 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0568340, gene-QOZ80_7BG0599720 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0143220.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_041068 |
| Poaceae | Oryza coarctata | 2 | Oco13G008010, Oco14G008510 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g31850.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G286500 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G005970, Chr24G007950, Chr27G011310, Chr28G007280 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G421300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG030400, gene_TRIDC2BG034130 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G232200.2, TraesCS2B02G250800.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb322160_P003 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-38376, nbis-gene-950 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5193, Zma_g6480 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.731, evm.TU.LG26.297 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g03440 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1234 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-20937 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.762 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009737 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1293 |
| Salicaceae | Populus euphratica | 3 | populus_peu22504, populus_peu23901, populus_peu37071 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132616739, gene-LOC132623532, gene-LOC132636601 |
| Solanaceae | Solanum chilense | 2 | SOLCI003300400, SOLCI003913700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007657, gene-LOC107024050 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.21417_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1505 |
| Zosteraceae | Zostera marina | 1 | Zosma03g22920.v3.1 |