Basic Information
Locus ID:
AsparagusV1_03.113.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 2320267 | 2322168 | + | AsparagusV1_03.113.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 70,557.42 Da | 40.24 | 73.17 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 249 | 270 | 0.22 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 313 | 339 | 0.19 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 507 | 623 | 1.3E-35 | IPR032867 |
| Pfam | PF01535 | PPR repeat | 342 | 371 | 6.1E-5 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 414 | 438 | 0.0034 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 357 | 520 | 3.0E-22 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 219 | 341 | 1.1E-8 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 342 | 374 | 2.9E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 339 | 373 | 11.136739 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25580.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_020255581.1 | pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Asparagus officinalis] | 0 |
| Q680H3 | Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H75 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5P1F6F0 | DYW_deaminase domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C03F1130 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology