Basic Information
Locus ID:
AsparagusV1_03.1020.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Belongs to the eukaryotic ribosomal protein eS6 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 22595978 | 22600225 | + | AsparagusV1_03.1020.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.60 | 28,470.92 Da | 39.78 | 73.07 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01092 | Ribosomal protein S6e | 1 | 128 | 9.7E-57 | IPR001377 |
| Gene3D | G3DSA:1.20.5.2650 | - | 133 | 234 | 2.9E-38 | - |
| SMART | SM01405 | Ribosomal_S6e_2 | 1 | 128 | 3.8E-83 | IPR001377 |
| PIRSF | PIRSF002129 | RPS6e | 1 | 251 | 1.1E-119 | IPR014401 |
| ProSitePatterns | PS00578 | Ribosomal protein S6e signature. | 52 | 63 | - | IPR018282 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 251 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 235 | - | - |
| Coils | Coil | Coil | 189 | 216 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko01521 (EGFR tyrosine kinase inhibitor resistance)
map01521 (EGFR tyrosine kinase inhibitor resistance)
ko03010 (Ribosome)
map03010 (Ribosome)
ko04066 (HIF-1 signaling pathway)
map04066 (HIF-1 signaling pathway)
ko04150 (mTOR signaling pathway)
map04150 (mTOR signaling pathway)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04371 (Apelin signaling pathway)
map04371 (Apelin signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31700.1 | ribosomal protein S6. Encodes a putative ribosomal protein S6 (rps6a). RPS6A and RPS6B are fully redundant and essential during gametogenesis. | 0 |
| RefSeq | XP_020256608.1 | 40S ribosomal protein S6 isoform X1 [Asparagus officinalis] | 0 |
| Q9M3V8 | Small ribosomal subunit protein eS6 OS=Asparagus officinalis OX=4686 GN=rps6 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1FAM9 | 40S ribosomal protein S6 OS=Asparagus officinalis OX=4686 GN=A4U43_C03F10200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology