Basic Information
Locus ID:
AsparagusV1_03.1.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
F-box associated domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 6586 | 7131 | + | AsparagusV1_03.1.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.66 | 20,427.19 Da | 62.58 | 90.61 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 21 | 53 | 4.2E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 20 | 71 | 6.28E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 5 | 70 | 2.7E-6 | - |
| SMART | SM00256 | fbox_2 | 21 | 61 | 2.9E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 15 | 72 | 8.861604 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G02030.1 | F-box family protein. | 0 |
| RefSeq | XP_020255470.1 | uncharacterized protein LOC109832540 [Asparagus officinalis] | 0 |
| TrEMBL | A0A5P1FAM0 | F-box domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C03F10 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14496 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl82814 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000044096 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30102390 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.1.V1.1, AsparagusV1_03.2.V1.1 ... |
| Plantaginaceae | Plantago ovata | 2 | Pov_00028667, Pov_00041475 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4812 |