Basic Information
Locus ID:
AsparagusV1_02.979.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
F-box protein SKIP14-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 22864250 | 22869440 | + | AsparagusV1_02.979.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.71 | 41,827.78 Da | 43.84 | 79.74 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 127 | 171 | 1.4E-7 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 187 | 242 | 1.19E-7 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 118 | 170 | 2.62E-8 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 121 | 169 | 2.9E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 175 | 282 | 2.4E-10 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 122 | 169 | 10.053852 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26000.1 | Ribonuclease inhibitor. | 0 |
| RefSeq | XP_020253383.1 | F-box protein SKIP14-like [Asparagus officinalis] | 0 |
| Q9LU91 | F-box protein SKIP14 OS=Arabidopsis thaliana OX=3702 GN=SKIP14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1FJY8 | F-box domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C02F9790 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology