Basic Information
Locus ID:
AsparagusV1_02.969.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 22409565 | 22416403 | + | AsparagusV1_02.969.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.67 | 42,487.98 Da | 43.88 | 60.08 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 203 | 230 | 1.9E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 243 | 265 | 2.0E-8 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 195 | 229 | 3.14E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 237 | 270 | 2.35E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 272 | 303 | 4.5E-10 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 234 | 271 | 3.7E-13 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 193 | 232 | 2.6E-12 | - |
| SMART | SM00547 | zf_4 | 204 | 228 | 1.9E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 276 | 300 | 0.038 | IPR001876 |
| SMART | SM00547 | zf_4 | 243 | 267 | 4.3E-4 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 274 | 303 | 9.483959 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 202 | 231 | 9.856602 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 241 | 270 | 10.184075 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 278 | 297 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 245 | 264 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 196 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_020253376.1 | zinc finger protein VAR3, chloroplastic [Asparagus officinalis] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5P1FHB2 | Zinc finger protein VAR3, chloroplastic OS=Asparagus officinalis OX=4686 GN=A4U43_C02F9690 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology