Basic Information
Locus ID:
AsparagusV1_02.894.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
High mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 19793888 | 19808481 | - | AsparagusV1_02.894.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.56 | 41,085.17 Da | 34.11 | 70.55 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 63 | 148 | 1.95664E-50 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 278 | 342 | 6.16631E-21 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 278 | 345 | 5.1E-13 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 64 | 148 | 9.8E-18 | IPR001606 |
| SUPERFAMILY | SSF47095 | HMG-box | 266 | 349 | 1.83E-19 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 60 | 162 | 1.57E-29 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 261 | 355 | 1.2E-19 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 48 | 163 | 6.1E-27 | IPR036431 |
| SMART | SM01014 | ARID_2 | 58 | 148 | 2.2E-27 | - |
| SMART | SM00501 | bright_3 | 62 | 153 | 3.6E-31 | IPR001606 |
| SMART | SM00398 | hmgende2 | 277 | 346 | 3.6E-16 | IPR009071 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 278 | 345 | 14.002328 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 61 | 152 | 26.105017 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 282 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_020253308.1 | LOW QUALITY PROTEIN: high mobility group B protein 15-like [Asparagus officinalis] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1FHR7 | High mobility group B protein 15-like OS=Asparagus officinalis OX=4686 GN=A4U43_C02F8940 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology