Basic Information
Locus ID:
AsparagusV1_02.854.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 18285754 | 18295671 | - | AsparagusV1_02.854.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.84 | 21,280.73 Da | 28.21 | 80.37 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00850 | Histone deacetylase domain | 15 | 166 | 2.9E-52 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 13 | 168 | 1.53E-63 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 2 | 172 | 1.2E-65 | IPR037138 |
| PRINTS | PR01271 | Histone deacetylase signature | 13 | 30 | 1.3E-36 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 75 | 91 | 1.3E-36 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 152 | 170 | 1.3E-36 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 34 | 54 | 1.3E-36 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 88 | 103 | 1.2E-18 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 56 | 79 | 1.2E-18 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 135 | 148 | 1.3E-36 | IPR003084 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G44680.1 | histone deacetylase 9. Class I RPD3 type protein | 0 |
| RefSeq | XP_020253845.1 | histone deacetylase 9 [Asparagus officinalis] | 0 |
| Q8H0W2 | Histone deacetylase 9 OS=Arabidopsis thaliana OX=3702 GN=HDA9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1FHP3 | histone deacetylase OS=Asparagus officinalis OX=4686 GN=A4U43_C02F8540 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology